Your bait of falsehood takes this carp of truth,
And thus do we of wisdom and of reach,
With windlasses and with assays of bias,
By indirections find directions out.
To be sure, the doctrine of a personal God interfering with natural events could never be refuted, in the real sense, by science, for this doctrine can always take refuge in those domains in which scientific knowledge has not yet been able to set foot.
Our intelligence is imperfect, surely, and newly arisen; the ease with which it can be sweet-talked, overwhelmed, or subverted by other hardwired propensities - sometimes themselves disguised as the cool light of reason - is worrisome.
Don't imagine that you'll discover {the truth} by accumulating more knowledge. Knowledge creates doubt, and doubt makes you ravenous for more knowledge. You can't get full eating this way.
...And these vicissitudes come best in youth;
For when they happen at a riper age,
People are apt to blame the Fates, forsooth,
And wonder Providence is not more sage.
Adversity is the first path to truth:
He who hath proved war, storm, or woman's rage,
Whether his winters be eighteen or eighty,
Has won experience which is deem'd so weighty.
Wherefore also these Kinds [elements] occupied different places even before the universe was organised and generated out of them. Before that time, in truth, all these were in a state devoid of reason or measure, but when the work of setting in order this Universe was being undertaken, fire and water and earth and air, although possessing some traces of their known nature, were yet disposed as everything is likely to be in the absence of God; and inasmuch as this was then their natural condition, God began by first marking them out into shapes by means of forms and numbers.